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Image: “Biochemistry” by TheDigitalArtist. License: CC0 1.0

Structure and Function of Carbohydrates

Carbohydrates are the aldehydes or ketones of polyalcohols (alcohols with several carboxyl groups) with a carbon/water ratio of 1:1 which results in the chemical molecular formula of Cn(H20)n. In case of a hexose with 6 C-atoms, the molecular formula would, therefore, be C6(H20)6.

The number of relevant carbohydrates that you have to know as a medical student, however, is very limited and, with a few tricks, they can be studied and understood very quickly.

Note: The terms carbohydrate, saccharides, and carbohydrates are used as synonyms or interchangeably.

Monosaccharides (or simple carbohydrates) can be further classified by counting their carbon atoms. The most relevant monosaccharides for the metabolism (as well as for medical exams) are hexoses (6 C atoms) and pentoses (5 C atoms).

Carbohydrates with more or fewer C atoms also play a role, but to a smaller extent, i.e. glycerin aldehyde (3 C atoms), erythrose (4 C atoms) or sedoheptulose (7 C atoms), of which the last 2 represent an intermediate product in the hexose monophosphate pathway of glucose metabolism (see below). Aside from sedoheptulose, however, tetroses, trioses or heptoses are not as relevant for students of medicine which is why they are not mentioned here further.

Chirality and Isomerism of Monosaccharides


Image: D-glucose. By Ben; Yikrazuul, License: Public domain

Essential for the detection of isomerism is the ability to identify chiral centers in a molecule. Atom is always chiral if it has 4 different binding partners. Therefore, if this is applied to an aldohexose, i.e. D-glucose, one realizes that it possesses 4 chiral centers (C2–C5). As pentoses are 1 carbon atom smaller than hexoses, they only possess 3 chiral centers (C2–C4).

The D- and L-nomenclature of carbohydrates always refer to the position of the OH group at the C5 atom in the Fischer projection (i.e. the 2nd carbon atom from the bottom). If the OH group is to the left, it is an L-carbohydrate; if it is to the right, it is a D-carbohydrate (‘D’ from lat. dexter = right). All carbohydrates occurring in the human body are D-carbohydrates.

Three of the 4 most important hexoses for the body are isomers and they are therefore very similar to each other which, on the 1 hand, making them easy to learn. On the other hand, however, special caution is warranted as to not mistake 1 for the other.

Excursus: Stereochemistry and Isomerism Relationships of the Most Important Carbohydrates

With this flow chart, all isomerisms – not only those of carbohydrates – in organic chemistry can be identified.


  • Constitutional isomers = structural isomers (same molecular formula, different bonding pattern)
  • Stereoisomers (same molecular formula, same bonding pattern, different spatial arrangement)
  • Conformers (they can be converted into each other via rotation of the substituents to C-C mono binding (tub shape/chair shape)
  • Configurational isomers (same bonding pattern, a different arrangement of the substituents around a center)
  • Cis/trans isomers (they cannot be converted into each other via rotation of the substituents but rather face each other (trans) or are on the same side (cis) – often the case in double bonds)
  • Chirality (C atom is asymmetrically substituted – from the Greek word for hand ‘cheir’) is the geometric property displayed by any object which is non-superimposable on its mirror image
  • Enantiomers (non-superimposable mirror-image molecules)
  • Diastereomers (not (entirely) mirror-image molecules)

When trying to memorize the structural formula of the most important hexose, glucose, from which all other hexoses can be synthesized and through whose breakdown (glycolysis) 50% of the daily energy needs of a human being is covered, you can use the sound of a German fire engine as a mnemonic. ‘Ta Tü Ta Ta’ is the code for the glucose molecules that satisfy ravenous hunger if one remembers that starting at the 1st chiral C atom, ‘tü’ stands for an OH group to the left and ‘ta’ for an OH group to the right.


Image: Structure of galactose. By NEUROtiker, License: Public Domain

Galactose is an epimer of glucose and only differs from it in 1 chiral center (C4). If the OH groups are connected, the result is a ‘galactic fighter plane’, a type of spacecraft.

Mannose is an epimer of glucose as well and only differs in the 2nd C atom. Here, one can remember ‘the 2nd man is epimer’, meaning that mannose is a C-2 epimer of glucose.

The last most important carbohydrate for the body is fructose, which differs from glucose remove, as its carbonyl group is attached to the 2nd carbon atom, making it a ketose. As a ring form, fructose forms a furanose – in contrast to the other 3 hexoses which form a pyranose.

Caution: The ring formation creating a pyranose/furanose, generates a new chiral center!

The ring formation creating a pyranose in aldoses is generated through a reaction between the functioning aldehyde group at C1 and the OH group at C5. The molecule thus formed is also called hemiacetal. The hereby newly created carboxyl group in the new chiral center is highly reactive; as it lends the carbohydrate its reducing capabilities; it even has its own name: glycosidic OH group.

Hemiketal (i.e. fructose) is created when the keto group at C2 of a ketose reacts with the hydroxyl group at C5 thereby forming a pyranose instead of a furanose.

Pyranoses or furanoses are mostly written using the Haworth formula, meaning another nomenclature rule is added which is, however, just as simple as the D-/L- nomenclature.


Image: Structure of alpha-D-glucopyranose. By NEUROtiker, License: Public Domain


Image: Structure of beta-D-glucopyranose. By NEUROtiker, License: Public Domain

When the OH group is the 1st C atom from the bottom, it is an α-molecule; if it is at the top, it is a β-molecule.

For the process of converting the carbohydrate from the Fischer projection to the Haworth formula and vice versa, the ‘FLOH’ rule is helpful which states: ‘What’s left at Fischer’s is at the top at Haworth’s.’

α- and β-glucose are anomers and can be converted into each other via the open-chain form. As, however, the OH groups in α-glucose at the C1 and C2- atom are closer together than in β-glucose and nature ensures that conditions are as low energy as possible, the balance shifts to the side of β-glucose.

In the chair conformation, the cis/trans isomerism, as well as the spatial structure of molecules, are best recognized.


Image: β-glucoses. By Lecturio

Thereby, the question frequently asked is which OH groups are in axial, and which are in the equatorial position. Here, the hydroxy groups are positioned equatorially. An axial position can always be recognized by the vertical binding line (in this case hydrogen atoms).

Caution: In α-D-glucose in chair form, the carbonyl group is positioned axially on C1. The same OH group (C1) is positioned downward in the Haworth formula!


Image: Fischer projection of the aldopentose monosaccharide, D-ribose. By Christopher King, License: CC BY-SA 3.0


Image: Structure of alpha-D-ribofuranose. By NEUROtiker, License: Public domain

The most important pentose overall is the D-ribose on whose exact origin the pentose phosphate pathway provides more detailed information. Pentoses are essential components of ribonucleic acids.

Bond Structures of Carbohydrates

Carbohydrates can form a glycosidic bond with each other, as well as with other molecules, whereby one differentiates between an O-glycosidic bond and an N-glycosidic bond.

An O-glycosidic bond exists when the anomeric C atoms of 2 molecules react. The nomenclature of these bonds again consists of the α- or β-confirmation, as well as the indication of the numbers of the particular anomeric centers.

The α-β-conformation refers to the position ‘top’ (β) or ‘bottom’ (α) just like with the monosaccharides.

The N-glycosidic bond describes the binding of carbohydrate – not with another OH group – but rather with an NH group of another molecule. The most frequent occurrence of this type of bond is with asparagine, but the binding of a DNA-ribose, with bases such as adenine, should be remembered under the term ‘n-glycosidic bindings’ as well.

Classification of Carbohydrates


Even though there are incredibly large amounts of disaccharides, only 3 of them are applicable for a medical student, including their structural formula, as well as all their characteristics such as splitting and bond structure.

  1. Sucrose (fructose + glucose)
  2. Lactose (galactose + glucose)
  3. Maltose (glucose + glucose)
α-D-Glucose (1,2) – β-Fructose

Image: Structure of sucrose (saccharose). By NEUROtiker, License: Public domain


With regard to sucrose, it is important to note that it is not a reducing carbohydrate because all anomeric carboxyl groups are involved in the bond.

Lactose, the milk carbohydrate

β-Galaktose (1,4)-Glucose

Image: Structure of lactose. By NEUROtiker, License: Public domain

The splitting of the clinically significant lactose is an exception for the human body. The β-glycosidic bond of lactose is the only β-glycosidic bond that can be split by a human being.

In cases of the metabolic defect lactose intolerance, this splitting of the β-glycosidic bond is no longer possible. The typical symptoms, such as diarrhea and pain in the abdomen, occur because lactose remains in the intestinal lumen and causes osmotic absorption of water and osmotic diarrhea.

Maltose, the carbohydrate in beer


Image: Balance between the cyclic and open form of maltose. By NEUROtiker, License: Public domain

Maltose (as well as isomaltose Glc α1è6 Glc) is created, among others, by splitting starch with α-amylase. Maltose is a reducing carbohydrate.

Reducing and non-reducing carbohydrates can easily be distinguished by the fact that non-reducing disaccharides have 2 Greek letters in their names (sucrose: α-D-glucose(1.2)-β-fructose) and reducing ones only have 1(maltose: α-glucose (1.4)-glucose)


Oligosaccharides are combinations consisting of 3–20 carbohydrates. They play a role in metabolism as glycoproteins.


Polysaccharides are carbohydrates that come to mind 1st due to diets, bodybuilding, and alternative lifestyles which are broadcast by the media. Starch, enemy number 1 in the ‘low carbohydrate diet’, is a polysaccharide, for instance.

With regard to the general structure of polysaccharides, one should know that there are hetero- and homo-polysaccharides. Hetero-polysaccharides consist of several different monosaccharides, while homo-polysaccharides are a sequence of several of the same monosaccharides.

The most important homo-polysaccharides are cellulose, glycogen, and starch. All of them consist of several glucose molecules.


Image: Section of an amylopectin polymer. By NEUROtiker, License: Public domain

Starch is the carbohydrate stored in plants, as opposed to glycogen in which animals (as well as humans) store carbohydrates.

Starch consists of amylose (α-(1.4) Glc) as well as amylopectin (α-(1.4) Glc and sometimes α-(1.6) Glc) branched out due to its bonds α(1.6). Glycogen consists of α-(1.4) Glc and α-(1.6) Glc glycosidic bonds between glucose molecules as well. It does, however, have more α-(1.6)-bonds which is why it is more branched out than amylopectin.

Cellulose does not play a role in human metabolism, but it is an important fiber and promotes the proper functioning of the intestines.

Hetero-polysaccharides: complex Structure, easy to understand

Heteropolysaccharides are polysaccharides consisting of at least 2 different monosaccharides.

They are further categorized as follows:

  1. Mucopolysaccharides
  2. Proteoglycans
  3. Glycoprotein

Mucopolysaccharides (glycosaminoglycans)

These polysaccharides occur mainly in the extracellular matrix and support it through their extraordinary water-binding capacity. The hyaluronic acid, used by the cosmetics industry, is such a mucopolysaccharide and is supposed to fill in wrinkles with its water-binding characteristics and thereby smooth the skin.


Proteoglycans are basically glycosaminoglycans that are covalently bound to a protein (core protein), thereby organizing the saccharide chains and preventing them from scattering about without any structure in the extracellular matrix. The proportion of saccharides is higher in relation to the proteins.


Glycoproteins are saccharides bound to proteins. Their proportion is smaller in relation to the proteins. The attachment of the oligosaccharides to a protein is called glycosylation, which is a posttranslational modification mainly taking place in the Golgi apparatus. Almost all blood cells are glycosylated, except for albumin. Therefore, glycoproteins have different tasks such as immune defense in the form of immunoglobulins.


In addition to bonds between individual carbohydrates, carbohydrates can also form bonds with other biomolecules. Glycolipid means carbohydrate that has been attached to a lipid; this lipid is designated beneath the carbohydrate. E.g., a molecule like in the figure on the right; on the top, there is glucose, drawn in the axial equatorial form and that glucose is linked in the alpha position to a molecule that is a diacylglycerol.

Diacylglycerol is related to fat. Normally, if this were fat, this would have a glycerol backbone which would be the 3 carbons and each carbon would be attached to a fatty acid. Such a molecule could exist, e.g., in the membrane of a cell. Glycoglycerolipids exist, but they are not very common. A much more common glycolipid is that of the sphingolipid.


Sphingolipids are related in structure to glycoglycerolipids, but they are not the same, the glycoglycerolipid has a glycerol backbone which consists of 3 carbons. The sphingolipid has a backbone that is a little bit different; on the right side of the molecule, part of this backbone includes the N, the carbon that is bonded above it and then the CH2 which is bonded to the glucose at the very top.

This backbone is common to sphingolipids. In contrast to the glycerolipid, the diacylglycerol, these sphingolipids have only 1 fatty acid and they have another molecule attached to that, that looks like a fatty acid known as sphingosine.

In the 3rd position at the very top is glucose, a combination of glucose and sphingolipid, creating cerebroside. Cerebrosides are very common components of the nerve tissue, they were discovered in the brain. Whenever a simple carbohydrate like glucose, in this case, is attached, a cerebroside is formed.

However, if a more complex carbohydrate is attached at the very top, you get a ganglioside.


Another interesting group of modified saccharides is peptidoglycans. Peptidoglycans, as the name suggests, are long polymers of carbohydrate residues; they are modified carbohydrates that are presented with a repeating disaccharide. These components are linked to short peptides, in the case of the bacterial cell wall. The peptides are linked to only contain 4 amino acids.

The other repeating disaccharide is N-acetylglucosamine. When laying it out, the linkage makes a mesh or a network. There are long polymers running diagonally from the upper left to the lower right; those polymers and those diagonals contain the repeating glycan structure of N-acetylglucosamine and N-acetylmuramic acid. Perpendicular to those is the tetrapeptides that are interacting with each other.

Now those tetrapeptides are really interesting for 2 reasons; 1 is that the tetrapeptides contain within them at least 1 amino acid in the D configuration, this almost never happens in nature and this almost never happens for accidental purposes. And the other reason is, this is an example of where bacteria have used chemistry to their advantage.

Proteases mean enzymes that break down proteins, enzymes that would break down peptides will not work on D amino acids. They are designed to work on L. So this is a defense mechanism bacteria, evolved over the years to protect their cell walls from being degraded.

Bacteria don’t get the last word in this overall scheme though, and the reason that’s the case is the antibiotic penicillin. Penicillin is killing bacteria for a very important reason, it stops the bacterial cell wall from being assembled. Bacteria that can’t make a cell wall go on to divide and bacteria that can’t divide are doomed to die.

Easy distinction in exams

Proteoglycans: more carbohydrates than proteins; no branched out the chain.

Glycoproteins: fewer carbohydrates than proteins; branched out the chain.

This basic information establishes the foundation to capture the metabolism of carbohydrates.

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