The kidney (Latin: Ren, Greek: Nephrós) is the urinary system’s main organ. In order to understand the microscopic structure of this organ, it is useful to comprehend well its function. And for this, one has to learn about the different cell types and their structure. The nephron is the kidney’s functional unit and shall be particularly discussed here. After studying this article, you will be able to explain its components. These are the renal corpuscles, renal tubules and the collecting duct system. You will now read a short overview of the functions of the human kidney.
The Kidney

Image: "Internal Anatomy” by Phil Schatz. License: CC BY-SA 4.0

Are you more of a visual learner? Check out our online video lectures and start your anatomy course now for free!

Location of the Kidney

The kidneys are located in the retroperitoneum beneath the diaphragm on each side of to the spinal column. They are embedded in a groove, the renal fossa, which consists of the M. psoas major and the M. quadratus lumborum. The left kidney lies between the level of the 11th rib and the third lumbar vertebra.

Try the entire course for free: Basic Medical Courses


Due to the size of the liver, the right kidney lies in a slightly lower position, beginning at the level of the 12th rib extending to the lower edge of the third lumbar vertebra. Physiologically, the kidneys have a moving flexibility of about 3-4 cm, depending on the posture of the body and the movement of the diaphragm during breathing, since the kidneys are not firmly adhered to the back abdominal wall.

Kidney Position in Abdomen

Image: “Kidneys” by Phil Schatz. License: CC BY 4.0

Shape of the Kidney

As is well known, the kidney is bean-shaped and of a red-brown color. It has a thickness of 4 cm, a width of 5-7 cm and a length of about 11 cm (mnemonic: ‚four7-11‘). It weighs about 120-200 g.

The cranial and caudal edges are called poles, upper and lower (extremitas superior and extremitas inferior). The front surface of the kidney is called facies anterior, the back surface facies posterior.  The kidney’s lateral edge (margo lateralis) has a convex shape. The margo medialis is concave. The renal hilum (hilum renale) with the kidney vessels is located on this medial edge. The renal vein lies ventrally to the renal artery, which is, in turn, anterior to the ureter (mnemonic: ‘VAU‘). The renal hilum is the access to the renal sinus and the renal pelvis.

The Kidney

Image: “Internal Anatomy” by Phil Schatz. License: CC BY 4.0

Positional Relations to other Organs

  • The adrenal glands are located cranially to the upper kidney poles.
  • The subcostalis, N. iliohypogasticus and N. ilioinguinalis run dorsally.
Note: Because of the kidney’s proximity to these nerves, pain originating from the kidney may spread to the groin.
  • The right hepatic lobe, pars descendes duodeni and the right colonic flexure run ventrally to the right kidney. In front of the left kidney are situated the stomach, spleen, cauda pancreatis, the root of the  transverse mesocolon and the left colonic flexure.

The Kidney’s Relation to the Peritoneum

 Normal kidney size and its influencing factors

Image: “
Normal kidney size and its influencing factors” by ncing factors” von G.B., U. V., T. B., H. KJ., R. P., S.A., P. J.. License: CC BY 2.0

The kidneys, adrenal glands and ureters are retroperitoneal organs. This means that they have developed behind the peritoneum and remained there.

The capsula fibrosa is a capsule of firm connective tissue surrounding the kidney. Another capsule of fat (capsula adiposa) encloses the kidney and the associated adrenal gland. Finally, there is the fascia renalis, another capsule of connective tissue.

Function of the Kidney

The entire blood volume of the body is flushed through the kidneys several times each day. This is how the kidneys can control and regulate, among other things, the blood pressure, the water- and electrolyte-balance, the elimination of metabolic end-products and toxic substances, and the acid-base -balance.

The water- and electrolyte-balance

The hormone renin is secreted by the kidney as soon as there is a drop in blood pressure or volume. Renin acts as a protease to split angiotensinogen from the liver into angiotensin I. Angiotensin I is then converted into angiotensin II through angiotensin-converting-enzyme (ACE) in the lungs. The result is, among others, vasoconstriction involving an increase in blood pressure. Moreover, aldosterone is secreted from the adrenal gland. This leads to an increased retention of water and sodium. This chain of reactions is called renin-angiotensin-aldosterone -system (RAAS).

Atrial natriuretic peptide (ANP) is released if the heart’s right atrium has an increased blood volume. As a result, the kidneys excrete more water and sodium.

ADH (also known as vasopressin): If the blood is too concentrated, osmoreceptors in the hypothalamus will react. Here, ADH is produced and afterwards stored in the posterior lobe of the pituitary gland. As a result of this secretion, the kidneys transfer more water from the primary urine back to the blood, thus thinning the blood and increasing its volume.

The kidneys also regulate the blood content of potassium, bicarbonate, phosphate, magnesium and calcium through influences of hormones and specialized transporters.

Regulation of blood pressure

The kidneys regulate the blood pressure by changing the blood volume and the diameters of the blood vessels. Here, the renin-angiotensin-aldosterone-system plays an important part.

Regulation of the acid-base-balance

Changes in the pH level of the blood can have life-threatening consequences. The kidney has mechanisms for the excretion of protons and the reabsorption of bicarbonate.

The kidney’s hormones

Erythropoietin Secreted in cases of hypoxia Causes the proliferation of erythrocytes in order to increase the oxygen content in the blood
Renin Secreted due to changes in blood pressure or volume Activation of RAAS (see above)
Calcitriol Influenced by parathormone, concentration of calcium and phosphate, prolactin and calcitriol Promoting bone mineralization and the absorption of calcium in the intestine

Synthesis of glucose

Glucose is produced in the kidneys by gluconeogenesis and glycogenolysis. This mainly happens through the formation of glucose-6-phoshpate from substrates like lactate, glycerol and amino acids. Glucose is then released into the blood circulation. Therefore, the kidneys contribute to the regulation of the blood sugar in the body.

Histology of the Kidneys

The kidney produces about 1.5 liter final urine each day. The entire blood volume actually flows through the kidneys every 4-5 minutes. The kidney is a paired organ which is situated in the retroperitoneum and embedded in a firm capsule of connective tissue. Another protective capsule of fatty tissue is wrapped around this capsule. The kidney’s parenchyma is divided into the renal cortex (thickness approx. 1cm) and the renal medulla on the inside.

The renal cortex forms the renal columns, the columnae renales. They extend into the medulla and divide it into 8-15 pyramids. The inner medulla leads to the calyces of the renal pelvis. Renal pelvis, calyces, the surrounding fatty tissue, vessels and nerves form the renal sinus (sinus renalis). The pelvis narrows and ultimately forms the ureter that drains the urine from the hilum.

Histologically, the kidney can be divided into the interstitium and the nephron.

The Nephron: Functional Unit of the Kidney

The nephron is the functional unit of the kidney. It consists of the renal corpuscles as well as the tubules (tubuli renales) and forms an ingenious filter system. In each kidney, there are approximately 1-1.5 million renal corpuscles. A corpuscle is composed of the following components:

The glomerulus is a tuft of capillaries, woven together by anastomoses. They are supplied with fresh blood by the incoming vas afferens. The blood leaves the glomerulus by the vas efferens.

Blood Flow in the Nephron

Image: “Blood Flow in the Nephron” by Phil Schatz. License: CC BY 4.0

The Bowman’s capsule surrounds the glomerulus and consists of two layers. The parietal layer, formed by a single-layer epithelium lying on a basal lamina, is located on the outside. The visceral layer, formed by so-called podocytes, is located on the inside. These are specialized cells with many processes lining the capillaries of the glomerulus. Both layers are connected at the vessel pole.

The mesangium consists of mesangium cells connected with gap junctions. They occupy the space in between the capillaries in the nephron. They are responsible for the formation of Extracellular Matrix (ECM) and of components of the glomerular basement membrane. They also have a phagocytic function and can contract when necessary to stabilize capillary walls.

The blood-urine-barrier: filter in the nephron

This important filter consists of 3 layers. Each layer refines the structure of the filter.

  1. The capillary endothelium has small windows (100nm wide) and a strong anionic glycocalyx.
  2. The glomerular basement membrane (GBM) is located in the center and is formed by the capillaries’ and podocytes’ basal lamina.
  3. The podocytes form processes which interdigitate, thereby forming gaps (40nm). These pores are covered by a membrane consisting mostly of a protein essential for the functioning of the filtration barrier called nephrin. Podocytes also have a strong anionic glycocalyx facing the urinary side.

Molecules up to a size of 4 nm are filtered through these structures and sorted out based on their electrical charge. This way especially, proteins are prevented from entering into the urine. The ratio of pressure of capillaries to capsule chamber (55 mmHg : 15 mmHg) also plays a role in filtration.

In general, the renal corpuscles are only located in the renal cortex. Nephrons may however be called cortical, mediocortical, juxtamedullary, depending on the position of the renal corpuscle. The blood that has to be filtered passes through the renal corpuscle and then the blood-urine barrier selects the filtrate that enters the Bowman space. From here the ultra filtrate begins its process of water reabsorption and solute modification.

Schematic structure of the renal corpuscle:

Schematic structure of the renal corpuscle:

Image: “Schematischer Aufbau des Nierenkörperchens ” by Michał Komorniczak. License: CC BY-SA 3.0

A: Renal corpuscle; B: Proximal tubule; C: Distal convoluted tube; D: Juxtaglomerular apparatus 1: Basement membrane; 2: Bowman’s capsule, parietal layer; 3: Bowman’s capsule, visceral layer; 3a: Podocyte pedicles; 3b: Podocyte; 4: Bowman’s space (urinary space); 5a: Mesangium – intraglomerular cells; 5b: Mesangium – extraglomerular cells; 6: Juxtaglomerular cells; 7: Macula densa; 8: Myocytes (cells of smooth muscle); 9: Afferent arteriole; 10: Glomerulus capillaries; 11: Efferent arteriole

The renal tubules (tubuli) of the nephron

The proximal tubule begins with the convoluted pars contorta and changes into the distal straight pars recta. In this part, 80 % of the primary urine’s water, glucose, amino acids (Na+ symport), electrolytes and urea are reabsorbed. This task is carried out by the cubic epithelium studded with a dense brush border.

The cells are connected and tightly sealed by tight junctions and zonulae adherens. The cells appear dark under the microscope. They are rich in mitochondria, vesicles for endocytosis, lysosomes and peroxisomes. In this part of the renal tubules, calcidiol is converted to calcitriol under the influence of the hormone PTH.

The intermediary tubule, however, shows a flat epithelium which hardly features any vesicles or other of the aforementioned structures.

Thick ascending limb of Henle loop

Image: “Dicker aufsteigender Teil der Henleschleife” by Lennert B. License: CC BY 3.0

In the following distal tubule, especially NaCl is absorbed, but only little water. It is a flatter cubic epithelium with many Na/K-ATPases and many tight junctions. The distal tubule is also divided into the pars recta with the intermediary macula densa (which is next to the extraglomerular mesangium) and the pars contorta.

The loop of Henle sits between the proximal and distal tubules and refers to the part of the renal tubule that comprises the intermediate tubule and the straight parts of the proximal and of the distal tubule.

The distal tubule merges into the junctional tubule and finally into the collecting tubule

The collecting tubule consists of:

  • Principal cells: They are cubic, the cytoplasm appears pale. Water can be reabsorbed from the urine under the influence of the hormone ADH. It is transported from cell to cell by aquaporins. The hormone aldosterone also works here in order to absorb sodium.
  • Intercalated cells – type A and B: These cells are used for the regulation of protons and potassium. Therefore, they have many H+-ATPases and H+/K+-ATPases. They are darker than the principal cells. Subsequently, several collecting tubules unite and form the ductus papillaris which then runs to the kidney pelvis.

The juxtaglomerular apparatus is a distinctive structure in the kidney and acts as a local controller for the NaCl-concentration and as a regulator for the blood pressure in the body. It consists of many different cells.

The iuxtaglomerular cells lie between the endothelium and the media of the vas afferens. They react upon activation of the sympathetic system (e.g. hypovolemia) and upon drops inpressure which leads to the secretion of renin (renin → angiotensinogen → angiotensin I → angiotensin II (by ACE) → leads to an increase in aldosterone secretion in the adrenal glands and vasoconstriction → higher blood pressure).

The palisade shaped cells of the macula densa belong to the cells of the distal tubule. They are located next to the vas afferens and continuously measure the concentration of intraluminal sodium. If detecting a rash of sodium, the vas afferens contracts.

The extraglomerular mesangium cells (Goormaghtigh cells) are located between the juxtaglomerula cells and the macula densa cells.

The Interstitium

It consists of connective tissue and free cells as well as nerves, vessels and the peritubular fibroblasts. These cells produce erythropoietin, the growth hormone for erythrocytes when the oxygen in the blood is low.

In the clinic:

  • If the renal corpuscles and therefore the blood-urine-barrier are damaged, the result is a higher permeability for proteins. This leads to hypoproteinemia, generalized edemas and a higher vulnerability for infections.
  • The kidneys may reabsorb glucose up to a certain threshold value (a blood glucose level of 200mg/dl). Especially in patients with diabetes mellitus, this limit is being exceeded which results in glucosuria.
  • There is a threshold value for hemoglobin as well. An excess, e.g. during increased hemolysis, leads to hemoglobinuria.

Diseases of the Kidney

Get an overview of the most important pathologies of the kidney. Here, you find the most relevant study examples for the categories malformations, inflammations, cysts and kidney stones.

Malformations of the kidney: renal agenesis and horseshoes kidney

Renal agenesis refers to the congenital absence of one (unilateral) or both (bilateral) kidneys. The absence of one kidney may be compensated by the remaining kidney. Bilateral agenesis, however, is always fatal.

A horseshoe kidney is a frequently occurring abnormality of the kidney. The kidneys are fused together at their lower poles to form the shape of a horseshoe. This malformation usually is asymptomatic.

Renal inflammation

The acute pyelonephritis is a bacterial infection which is mostly caused by an ascending urinary tract infection. In 70 % of the cases, the trigger is Escherichia coli – an often asked fact in exams. Common symptoms include fever, dysuria (problems with urination) and pain on percussion in the flank.

Kidney cysts

“CT of patient with polycystic kidney disease

Image: ““CT of patient with polycystic kidney disease” by Sb2207. License: CC BY 3.0

The simple kidney cyst is the most common renal alteration. The Bosniak-classification distinguishes between simple and complex cysts, depending on whether they have septa or calcifications.

The cystic kidney, in turn, refers to a pathology that is either congenital or acquired. The classification of this pathology follows the system of Potter. The hereditary form is called polycystic, whereas cystic changes caused by dysplastic development are called multicystic.

Kidney stones or urolithiasis

Kidney Stone

Image: “Kidney Stone” by Melensdad. License: CC BY 2.5

Kidney stones develop when there is an over-saturation of one substance in the urine. Depending on the urinary pH, the substance settles and forms stones.

There are many reasons for high concentrations in urine. Too little fluid intake, a high fluid loss, a nutrition rich in sodium chloride and calcium, immobilization during a long period of time, hormonal changes, gout and many other things may be responsible for the formation of kidney stones.

Inorganic and organic stones are to be looked at separately:

Inorganic stones:

  • Stones of calcium oxalate (65 %), calcium phosphate (10 %), or magnesium-ammonium-phosphate (10 % – also called struvite stones)

These stones are visible on radiographs without the application of a contrast medium.

Organic stones:

  • Uric acid residues (10 % – increased in gout), cystine stones (1 %)

These stones cannot be seen without the application of a contrast medium.

Symptoms occur when the urine flow is obstructed or the stone gets stuck in a narrow part. Common symptoms include pain in the flanks spreading to the lower abdomen and back. They can even lead to colic, nausea and vomiting, sometimes to blood in the urine. As a result of kidney stones, complications may occur, leading to urinary obstruction and infection.

Small kidney stones often travel through the ureters and bladder by themselves. However, if the passage is not possible, the following measures can be taken:

  • Extra-corporal shock wave lithotripsy: The kidney stone is placed at the intersection of two shock waves and decomposes into many fragments.
  • Pyelotomy: A surgery in which the renal pelvis is opened.
  • Flexible or semi-rigid ureteroscopy: The ureter is flushed, and the stone is crushed.

Renal cell carcinoma

The most common malignant renal cancer is the renal cell carcinoma formerly known as Grawitz tumor. It originates mainly in the epithelia of the proximal tubule. Under the microscope, the cancer can be discerned as a clear cell tumor, which means the cytoplasm is full of glycogen and lipids.

Renal cell carcinoma can be detected early in an ultrasonic examination. Symptoms, e.g. pain in the flank or painless hematuria, occur late. The moment of detection is very crucial for the progression of the disease and prognosis. Men are affected twice as often as women.

Kidney transplantation

If there is a definitive kidney failure, a kidney transplant is the best treatment.

Note: The donor organ is inserted extraperitoneally into the fossa iliaca and anastomosed with the iliac vessels. Hereby, the typically performed skin incision resembles the form of a hockey stick.

Organs to be transplanted may be obtained either from a living donor or from a deceased donor (post-mortem donation). There are some advantages to the living donation: There is little or no waiting time and a longer functioning of the donor organ and a higher life expectancy for the receiver can be expected.

Post-mortem donation means that the organ stems from a person that has been determined brain dead. The criteria for a possible donor include the matching of HLA-antigens. The waiting time for such a donor organ is usually several years and is bridged by dialysis (‘blood cleansing’).

Some complications may occur after a kidney transplant. In addition to the risk of wound infection, thrombosis and other typical postoperative complications, there may be a rejection. In order to minimize the risk, the receiver will have to take immunosuppressants his entire life.

Examination of the Kidney

Bimanual palpation In slim patients, the lower renal poles can be felt. In the supine position, one hand pushes onto the anterior abdominal wall. The other hand holds the back and pushes against the abdominal wall.
X-ray The renal pelvis is only visible in patients with radiopaque stones. Otherwise, contrast medium is needed: intravenous pyelography or retrograde pyelography.
Urinanalysis Performed on midstream urine. In the urine strip test, erythrocytes, leukocytes, pH, glucose, protein, nitrite and ketone may be detected in urine.
Sonography In the supine position. Findings are standard size, extensions of the renal pelvis, kidney stones, cysts and tumors.
Scintigraphy Assessment of the renal function.

Popular Exam Questions about the Kidney

The answers are below the references.

1. Which hormone acts on the kidney and regulates the plasma osmolality?

  1. Renin
  2. ADH
  3. Erythropoietin
  4. Prolactin
  5. Aldosterone

2. What is the topographic relation of the kidneys to the peritoneum?

  1. Intraperitoneal
  2. Secondary retroperitoneal
  3. Primary retroperitoneal
  4. Subperitoneal
  5. Mesoperitoneal

3. What is the maximum size of molecules to cross the blood-urine barrier?

  1. 4nm
  2. 5nm
  3. 10nm
  4. 40nm
  5. 100nm
Lecturio Medical Courses

Leave a Reply

Your email address will not be published. Required fields are marked *